portal-pipeline-utils
stable
  • Portal Pipeline Utilities
  • Install
  • pipeline_utils
  • API
  • Contribute a Pipeline
  • Deploy Pipelines to AWS Environment
  • Pipeline’s Repository Structure
  • Portal Objects
    • File Format
    • File Reference
    • Software
    • Workflow
    • Pipeline
portal-pipeline-utils
  • Portal Objects
  • Edit on GitHub

Portal Objects

  • File Format
    • Template
    • Fields Definition
      • Required
        • name
        • extension
        • description
      • Optional
        • secondary_formats
        • file_types
  • File Reference
    • Template
    • Fields Definition
      • Required
        • name
        • description
        • format
        • version
      • Optional
        • secondary_files
        • status
        • license
  • Software
    • Template
    • Fields Definition
      • Required
        • name
        • version
        • commit
      • Optional
        • title
        • source_url
        • description
        • license
  • Workflow
    • Template
    • General Fields Definition
      • Required
        • name
        • description
        • runner
        • input
        • output
      • Optional
        • title
        • software
    • Input Definition
      • argument_type
    • Output Definition
      • argument_type
      • secondary_files
      • argument_to_be_attached_to
  • Pipeline
    • Template
    • General Fields Definition
      • Required
        • name
        • description
        • input
        • workflows
      • Optional
        • title
    • Workflows Definition
      • dependencies
      • version
      • input
      • output
      • config
    • Input Definition
      • argument_type
      • files
      • value
      • Linking Fields
        • source
        • source_argument_name
      • Input Dimension Fields
        • scatter
        • gather
        • input_dimension
        • extra_dimension
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